Comunicação e Tecnologias
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- ItemA Perspective on the Missing at Random Problem: synthetic generation and benchmark analysis(IEEE - Institute of Electrical and Electronics Engineers, 2024-11-12) Cabrera-Sánchez, Juan Francisco; Pereira, Ricardo Cardoso; Abreu, Pedro Henriques; Silva-Ramírez, Esther LydiaProgressively more advanced and complex models are proposed to address problems related to computer vision, forecasting, Internet of Things, Big Data and so on. However, these disciplines require preprocessing steps to obtain meaningful results. One of the most common problems addressed in this stage is the presence of missing values. Understanding the reason why missingness occurs helps to select data imputation methods that are more adequate to complete these missing values. Missing at Random synthetic generation presents challenges such as achieving extreme missingness rates and preserving the consistency of the mechanism. To address these shortcomings, three new methods that generate synthetic missingness under the Missing at Random mechanism are proposed in this work and compared to a baseline model. This comparison considers a benchmark covering 33 data sets and five missingness rates (10%,20%,40%,60%,80%). Seven data imputation methods are compared to evaluate the proposals, ranging from traditional methods to deep learning methods. The results demonstrate that the proposals are aligned with the baseline method in terms of the performance and ranking of data imputation methods. Thus, three new feasible and consistent alternatives for synthetic missingness generation under Missing at Random are presented.
- ItemImputation of Data Missing Not at Random: artificial generationand benchmark analysis(Elsevier, 2024-09-01) Pereira, Ricardo Cardoso; Abreu, Pedro Henriques; Rodrigues, Pedro Pereira; Figueiredo, Mário A. T.Experimental assessment of different missing data imputation methods often compute error rates between the original values and the estimated ones. This experimental setup relies on complete datasets that are injected with missing values. The injection process is straightforward for the Missing Completely At Random and Missing At Random mechanisms; however, the Missing Not At Random mechanism poses a major challenge, since the available artificial generation strategies are limited. Furthermore, the studies focused on this latter mechanism tend to disregard a comprehensive baseline of state-of-the-art imputation methods. In this work, both challenges are addressed: four new Missing Not At Random generation strategies are introduced and a benchmark study is conducted to compare six imputation methods in an experimental setup that covers 10 datasets and five missingness levels (10% to 80%). The overall findings are that, for most missing rates and datasets, the best imputation method to deal with Missing Not At Random values is the Multiple Imputation by Chained Equations, whereas for higher missingness rates autoencoders show promising results.
- ItemSiamese Autoencoder Architecture for the Imputation of Data Missing Not at Random(Journal of Computational Science, 2024-06) Pereira, Ricardo Cardoso; Abreu, Pedro Henriques; Rodrigues, Pedro PereiraMissing data is an issue that can negatively impact any task performed with the available data and it is often found in real-world domains such as healthcare. One of the most common strategies to address this issue is to perform imputation, where the missing values are replaced by estimates. Several approaches based on statistics and machine learning techniques have been proposed for this purpose, including deep learning architectures such as generative adversarial networks and autoencoders. In this work, we propose a novel siamese neural network suitable for missing data imputation, which we call Siamese Autoencoder-based Approach for Imputation (SAEI). Besides having a deep autoencoder architecture, SAEI also has a custom loss function and triplet mining strategy that are tailored for the missing data issue. The proposed SAEI approach is compared to seven state-of-the-art imputation methods in an experimental setup that comprises 14 heterogeneous datasets of the healthcare domain injected with Missing Not At Random values at a rate between 10% and 60%. The results show that SAEI significantly outperforms all the remaining imputation methods for all experimented settings, achieving an average improvement of 35%. This work is an extension of the article Siamese Autoencoder-Based Approach for Missing Data Imputation presented at the International Conference on Computational Science 2023. It includes new experiments focused on runtime, generalization capabilities, and the impact of the imputation in classification tasks, where the results show that SAEI is the imputation method that induces the best classification results, improving the F1 scores for 50% of the used datasets.